Welcome to OpenOmics¶
We're a community of bioinformaticians and computational biologists building reproducible Snakemake pipelines for genomics and multi-omics analysis.
What We Do¶
Reproducible Workflows - Creating Snakemake pipelines for bioinformatics analysis
Open Source - All our pipelines are open source and community-driven
Best Practices - Following scientific computing standards and containerization
Our Snakemake Pipelines¶
Browse our collection of Snakemake Pipelines designed for various genomics and omics analyses.
Why Snakemake?¶
Workflow Management
Snakemake provides a readable Python-based workflow definition language and a powerful execution environment that scales from single workstations to HPC clusters and cloud environments.
Key Features
- Reproducibility - Conda/container integration ensures consistent results
- Scalability - Run on laptops, HPC clusters, or cloud infrastructure
- Readability - Python-based syntax is easy to learn and maintain
- Flexibility - Supports various workflow patterns and tools
All OpenOmics pipelines leverage these features for robust bioinformatics analysis!
Get Started¶
Ready to use our pipelines? Check out our Snakemake Pipelines page to explore available workflows.
Join our community! Visit our GitHub organization to contribute or report issues.