Checks if CellSight config data.table contains any errors

Checks if CellSight config data.table contains any errors. It is useful and reccomended to run this function if users have motified the CellSight config manually. Errors can include (i) levels in scConf does not match that in the Seurat/SingleCellExperiment object, (ii) number of levels does not match number of colours and (iii) specified colours are invalid colours.

Usage

checkConfig(scConf, obj)

Arguments

scConf

CellSight config data.table

obj

input single-cell object for Seurat (v3+) / SingleCellExperiment data or input file path for h5ad / loom files

Value

any potential error messages

Author

John F. Ouyang

Examples

if (FALSE) { # \dontrun{
checkConfig(scConf, seu)
} # }