Make h5 object from Seurat assay data
Usage
makeH5fromSeurat(obj, sc1meta, filename, gex.assay, gex.slot, chunkSize)
Arguments
- obj
input Seurat (v3+) object
- sc1meta
data.table of cell metadata
- filename
filename of output h5 file
- gex.assay
assay in Seurat object to use
- gex.slot
slot in single-cell assay to use
- chunkSize
number of genes written to h5file at any one time
