Generate data files required for shiny app (spatial data) — makeShinyFilesSpatial • cellsight

Generate data files required for shiny app, specifically spatial data A prefix is specified for each set of files to allow for multiple single-cell datasets in a single Shiny app.

Usage

makeShinyFilesSpatial(
  obj,
  scConf,
  shiny.prefix = "sc1",
  shiny.dir = "shinyApp/"
)

Arguments

obj: input Seurat (v3+) object or input file path for h5ad file
scConf: CellSight config data.table
shiny.prefix: specify file prefix
shiny.dir: specify directory to create the shiny app in

Value

data files required for shiny app

Author

John F. Ouyang

Examples

if (FALSE) { # \dontrun{
makeShinyFilesSpatial(seu, scConf, shiny.prefix = "sc1", shiny.dir = "shinyApp/")
} # }