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About OpenOmics

We are a community of bioinformaticians, computational biologists, and data scientists committed to creating high-quality, reproducible Snakemake pipelines for genomics and multi-omics research.

Our Mission

To build reproducible, scalable, and well-documented bioinformatics workflows that accelerate scientific discovery and promote open science.

Our Values

Reproducibility

We prioritize reproducibility in every pipeline. Using Snakemake, containerization, and environment management, we ensure that analyses can be reliably reproduced across different systems and over time.

Open Science

Open source is fundamental to scientific progress. We share our workflows, documentation, and knowledge openly with the research community.

Community

Science is collaborative. Our pipelines are built by researchers, for researchers, with input from the broader bioinformatics community.

Best Practices

We follow computational biology best practices, including version control, automated testing, comprehensive documentation, and adherence to workflow standards.

What We Build

OpenOmics focuses on creating Snakemake workflows for:

  • Genomics - DNA sequencing analysis pipelines
  • Transcriptomics - RNA-seq and gene expression analysis
  • Epigenomics - ChIP-seq, ATAC-seq, and methylation studies
  • Multi-omics - Integrated analysis workflows
  • Variant Calling - SNP and indel detection pipelines
  • Quality Control - Data preprocessing and QC workflows

Technology Stack

Our pipelines leverage:

  • Snakemake - Workflow management
  • Conda/Mamba - Environment management
  • Singularity/Docker - Containerization
  • Git/GitHub - Version control and collaboration

Get in Touch

Want to contribute or learn more? Here's how you can reach us:

Building reproducible bioinformatics workflows, together.